Akiba So
fc468464b2
Context: Build a spatial risk assessment system correlating air quality data with children's respiratory disease incidence across Wuhan. Approach: FastAPI backend serving PostGIS spatial queries, React frontend with Deck.gl maps, and a PyTorch SpatialTemporalGCN pipeline for multi-day (1d/3d/7d) risk prediction. Changes: - backend/ — FastAPI API with auth (JWT), alerts, risk analysis, geocoded case data, grid statistics, and report endpoints - frontend/ — React dashboard with interactive risk maps, alert monitoring, district comparison charts, and timeline player - models/ — SpatialTemporalGCN model with trained weights and ONNX export for inference - scripts/ — ETL pipeline for weather + medical data, grid generation, feature engineering, training, and daily inference - deploy/ — Docker Compose configs for backend, frontend, and MLflow - docs/ — API docs, deployment guide, user guide, and code review Impact: Enables spatial risk visualization, alert monitoring, and ML-driven health risk forecasting for environmental health teams.
60 lines
1.9 KiB
Python
60 lines
1.9 KiB
Python
"""
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Structured logging configuration for CBPOA backend.
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- LOG_LEVEL: DEBUG, INFO, WARNING, ERROR, CRITICAL (default INFO)
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- LOG_FORMAT: "json" for production, "text" for human-readable dev output (default text)
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"""
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import logging
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import json
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import sys
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import os
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from datetime import datetime, timezone
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class JSONFormatter(logging.Formatter):
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"""Emit structured JSON log lines for production."""
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def format(self, record: logging.LogRecord) -> str:
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log_entry = {
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"timestamp": datetime.fromtimestamp(record.created, tz=timezone.utc).isoformat(),
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"level": record.levelname,
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"logger": record.name,
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"message": record.getMessage(),
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}
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if record.exc_info and record.exc_info[1]:
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log_entry["exception"] = self.formatException(record.exc_info)
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# Include extra fields (request_id, method, path, etc.)
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for key in ("request_id", "method", "path", "status_code", "duration_ms"):
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val = getattr(record, key, None)
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if val is not None:
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log_entry[key] = val
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return json.dumps(log_entry, ensure_ascii=False)
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def setup_logging() -> None:
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"""Configure root logger based on environment variables."""
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level_name = os.getenv("LOG_LEVEL", "INFO").upper()
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level = getattr(logging, level_name, logging.INFO)
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log_format = os.getenv("LOG_FORMAT", "text").lower()
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handler = logging.StreamHandler(sys.stdout)
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if log_format == "json":
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handler.setFormatter(JSONFormatter())
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else:
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handler.setFormatter(
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logging.Formatter(
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"%(asctime)s | %(levelname)-8s | %(name)s | %(message)s",
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datefmt="%Y-%m-%d %H:%M:%S",
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)
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)
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root = logging.getLogger()
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root.handlers.clear()
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root.addHandler(handler)
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root.setLevel(level)
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# Quiet noisy third-party loggers
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logging.getLogger("uvicorn.access").setLevel(logging.WARNING)
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