feat: add analysis pages and raster risk map
Ship a new app version with broader analytics, restructured
dashboards, and a server-rendered risk map.
Frontend:
- Add Overview, Demographic, Disease, and Environmental Health
analysis pages
- Add AnomalyMarkers, CalendarHeatmap, and MetricHeatmapTable
components
- Rebuild Alerts map onto server-rendered raster risk tiles;
expand Monitoring, Trend, and District Comparison views
- Extend API client, stores, and TypeScript types
Backend:
- Add environment router (pollutants, lag correlations)
- Add risk_raster util serving XYZ 100m risk tiles
- Expand cases endpoints (demographics, seasonality, diagnoses)
and insights; harden auth and file-based loaders
Data & tooling:
- Add processed outpatient/inpatient/combined case parquet (LFS)
- Add nested CLAUDE.md guides, pyrightconfig, and test updates
2026-06-21 17:35:03 +08:00
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import asyncio
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from fastapi import APIRouter, HTTPException, Query, Response
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feat: Initial CBPOA commit — 武汉儿童呼吸疾病风险评估系统
Context: Build a spatial risk assessment system correlating air quality
data with children's respiratory disease incidence across Wuhan.
Approach: FastAPI backend serving PostGIS spatial queries, React
frontend with Deck.gl maps, and a PyTorch SpatialTemporalGCN pipeline
for multi-day (1d/3d/7d) risk prediction.
Changes:
- backend/ — FastAPI API with auth (JWT), alerts, risk analysis,
geocoded case data, grid statistics, and report endpoints
- frontend/ — React dashboard with interactive risk maps, alert
monitoring, district comparison charts, and timeline player
- models/ — SpatialTemporalGCN model with trained weights and ONNX
export for inference
- scripts/ — ETL pipeline for weather + medical data, grid generation,
feature engineering, training, and daily inference
- deploy/ — Docker Compose configs for backend, frontend, and MLflow
- docs/ — API docs, deployment guide, user guide, and code review
Impact: Enables spatial risk visualization, alert monitoring, and
ML-driven health risk forecasting for environmental health teams.
2026-06-05 02:13:49 +08:00
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from datetime import datetime, timedelta
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2026-06-05 02:27:10 +08:00
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from functools import lru_cache
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feat: Initial CBPOA commit — 武汉儿童呼吸疾病风险评估系统
Context: Build a spatial risk assessment system correlating air quality
data with children's respiratory disease incidence across Wuhan.
Approach: FastAPI backend serving PostGIS spatial queries, React
frontend with Deck.gl maps, and a PyTorch SpatialTemporalGCN pipeline
for multi-day (1d/3d/7d) risk prediction.
Changes:
- backend/ — FastAPI API with auth (JWT), alerts, risk analysis,
geocoded case data, grid statistics, and report endpoints
- frontend/ — React dashboard with interactive risk maps, alert
monitoring, district comparison charts, and timeline player
- models/ — SpatialTemporalGCN model with trained weights and ONNX
export for inference
- scripts/ — ETL pipeline for weather + medical data, grid generation,
feature engineering, training, and daily inference
- deploy/ — Docker Compose configs for backend, frontend, and MLflow
- docs/ — API docs, deployment guide, user guide, and code review
Impact: Enables spatial risk visualization, alert monitoring, and
ML-driven health risk forecasting for environmental health teams.
2026-06-05 02:13:49 +08:00
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from pathlib import Path
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from typing import Optional
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import logging
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import sys
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import math
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feat: add analysis pages and raster risk map
Ship a new app version with broader analytics, restructured
dashboards, and a server-rendered risk map.
Frontend:
- Add Overview, Demographic, Disease, and Environmental Health
analysis pages
- Add AnomalyMarkers, CalendarHeatmap, and MetricHeatmapTable
components
- Rebuild Alerts map onto server-rendered raster risk tiles;
expand Monitoring, Trend, and District Comparison views
- Extend API client, stores, and TypeScript types
Backend:
- Add environment router (pollutants, lag correlations)
- Add risk_raster util serving XYZ 100m risk tiles
- Expand cases endpoints (demographics, seasonality, diagnoses)
and insights; harden auth and file-based loaders
Data & tooling:
- Add processed outpatient/inpatient/combined case parquet (LFS)
- Add nested CLAUDE.md guides, pyrightconfig, and test updates
2026-06-21 17:35:03 +08:00
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import pandas as pd
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feat: Initial CBPOA commit — 武汉儿童呼吸疾病风险评估系统
Context: Build a spatial risk assessment system correlating air quality
data with children's respiratory disease incidence across Wuhan.
Approach: FastAPI backend serving PostGIS spatial queries, React
frontend with Deck.gl maps, and a PyTorch SpatialTemporalGCN pipeline
for multi-day (1d/3d/7d) risk prediction.
Changes:
- backend/ — FastAPI API with auth (JWT), alerts, risk analysis,
geocoded case data, grid statistics, and report endpoints
- frontend/ — React dashboard with interactive risk maps, alert
monitoring, district comparison charts, and timeline player
- models/ — SpatialTemporalGCN model with trained weights and ONNX
export for inference
- scripts/ — ETL pipeline for weather + medical data, grid generation,
feature engineering, training, and daily inference
- deploy/ — Docker Compose configs for backend, frontend, and MLflow
- docs/ — API docs, deployment guide, user guide, and code review
Impact: Enables spatial risk visualization, alert monitoring, and
ML-driven health risk forecasting for environmental health teams.
2026-06-05 02:13:49 +08:00
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PROJECT_ROOT = Path(__file__).parent.parent.parent
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sys.path.insert(0, str(PROJECT_ROOT))
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from models import (
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DistrictAggregation,
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HistoricalAggregationRequest,
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HistoricalAggregationResponse,
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GridGeoJSONResponse,
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GridPrediction,
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MultiDayPredictionRequest,
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MultiDayPredictionResponse,
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)
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2026-06-21 20:24:26 +08:00
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from data.case_loader import load_cases_by_district_daily
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feat: Initial CBPOA commit — 武汉儿童呼吸疾病风险评估系统
Context: Build a spatial risk assessment system correlating air quality
data with children's respiratory disease incidence across Wuhan.
Approach: FastAPI backend serving PostGIS spatial queries, React
frontend with Deck.gl maps, and a PyTorch SpatialTemporalGCN pipeline
for multi-day (1d/3d/7d) risk prediction.
Changes:
- backend/ — FastAPI API with auth (JWT), alerts, risk analysis,
geocoded case data, grid statistics, and report endpoints
- frontend/ — React dashboard with interactive risk maps, alert
monitoring, district comparison charts, and timeline player
- models/ — SpatialTemporalGCN model with trained weights and ONNX
export for inference
- scripts/ — ETL pipeline for weather + medical data, grid generation,
feature engineering, training, and daily inference
- deploy/ — Docker Compose configs for backend, frontend, and MLflow
- docs/ — API docs, deployment guide, user guide, and code review
Impact: Enables spatial risk visualization, alert monitoring, and
ML-driven health risk forecasting for environmental health teams.
2026-06-05 02:13:49 +08:00
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router = APIRouter(prefix="/api", tags=["grid"])
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feat: add analysis pages and raster risk map
Ship a new app version with broader analytics, restructured
dashboards, and a server-rendered risk map.
Frontend:
- Add Overview, Demographic, Disease, and Environmental Health
analysis pages
- Add AnomalyMarkers, CalendarHeatmap, and MetricHeatmapTable
components
- Rebuild Alerts map onto server-rendered raster risk tiles;
expand Monitoring, Trend, and District Comparison views
- Extend API client, stores, and TypeScript types
Backend:
- Add environment router (pollutants, lag correlations)
- Add risk_raster util serving XYZ 100m risk tiles
- Expand cases endpoints (demographics, seasonality, diagnoses)
and insights; harden auth and file-based loaders
Data & tooling:
- Add processed outpatient/inpatient/combined case parquet (LFS)
- Add nested CLAUDE.md guides, pyrightconfig, and test updates
2026-06-21 17:35:03 +08:00
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logger = logging.getLogger("cbpoa.grid")
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feat: Initial CBPOA commit — 武汉儿童呼吸疾病风险评估系统
Context: Build a spatial risk assessment system correlating air quality
data with children's respiratory disease incidence across Wuhan.
Approach: FastAPI backend serving PostGIS spatial queries, React
frontend with Deck.gl maps, and a PyTorch SpatialTemporalGCN pipeline
for multi-day (1d/3d/7d) risk prediction.
Changes:
- backend/ — FastAPI API with auth (JWT), alerts, risk analysis,
geocoded case data, grid statistics, and report endpoints
- frontend/ — React dashboard with interactive risk maps, alert
monitoring, district comparison charts, and timeline player
- models/ — SpatialTemporalGCN model with trained weights and ONNX
export for inference
- scripts/ — ETL pipeline for weather + medical data, grid generation,
feature engineering, training, and daily inference
- deploy/ — Docker Compose configs for backend, frontend, and MLflow
- docs/ — API docs, deployment guide, user guide, and code review
Impact: Enables spatial risk visualization, alert monitoring, and
ML-driven health risk forecasting for environmental health teams.
2026-06-05 02:13:49 +08:00
|
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feat: add analysis pages and raster risk map
Ship a new app version with broader analytics, restructured
dashboards, and a server-rendered risk map.
Frontend:
- Add Overview, Demographic, Disease, and Environmental Health
analysis pages
- Add AnomalyMarkers, CalendarHeatmap, and MetricHeatmapTable
components
- Rebuild Alerts map onto server-rendered raster risk tiles;
expand Monitoring, Trend, and District Comparison views
- Extend API client, stores, and TypeScript types
Backend:
- Add environment router (pollutants, lag correlations)
- Add risk_raster util serving XYZ 100m risk tiles
- Expand cases endpoints (demographics, seasonality, diagnoses)
and insights; harden auth and file-based loaders
Data & tooling:
- Add processed outpatient/inpatient/combined case parquet (LFS)
- Add nested CLAUDE.md guides, pyrightconfig, and test updates
2026-06-21 17:35:03 +08:00
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_parquet_cache: dict[str, pd.DataFrame] = {}
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feat: add reports center, admin drill-down, disease filter + bug fixes + perf optimization
Frontend features:
- 报表中心 (ReportsCenter): list/detail views, diagnosis breakdown chart, CSV export
- 多级行政下钻 (AdminBreadcrumb): 湖北省→武汉市→区→街道 hierarchical drill-down
- 按病种筛选 (DiseaseFilter): multi-select diagnosis filter on monitoring + reports pages
Backend:
- Add /forecast/{days} endpoint, diagnosis filter params on cases endpoints
- Add /streets aggregation endpoint, enrich reports with real case data
- Extract shared case_loader module
Bug fixes (14):
- Fix missing /risk/forecast route (404), historyApi pointing to non-existent router
- Fix min_risk filter silently ignored in insights/hotspots
- Fix type mismatches: CaseTrendResponse, CaseStatsResponse shapes
- Fix silent .catch(() => {}) swallowing errors, fetchAlerts not clearing stale state
- Fix lru_cache caching exceptions, generateReport used cachedGet for write op
- Fix missing useEffect deps in Insights, DistrictComparison, ReportsCenter
Performance (9):
- Zustand selectors across 9 components (eliminate re-render cascades)
- Fix districtCases.sort() mutating store state, inline IIFE → memo'd component
- CaseLocationMap: React.memo, race protection, correct deps
- AlertCard: stable callbacks, TimelinePlayer: useMemo, TopNav: clock isolation
- SideNav: modules array to module scope, DiseaseFilter: memoized filter
2026-06-08 18:40:08 +08:00
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feat: add analysis pages and raster risk map
Ship a new app version with broader analytics, restructured
dashboards, and a server-rendered risk map.
Frontend:
- Add Overview, Demographic, Disease, and Environmental Health
analysis pages
- Add AnomalyMarkers, CalendarHeatmap, and MetricHeatmapTable
components
- Rebuild Alerts map onto server-rendered raster risk tiles;
expand Monitoring, Trend, and District Comparison views
- Extend API client, stores, and TypeScript types
Backend:
- Add environment router (pollutants, lag correlations)
- Add risk_raster util serving XYZ 100m risk tiles
- Expand cases endpoints (demographics, seasonality, diagnoses)
and insights; harden auth and file-based loaders
Data & tooling:
- Add processed outpatient/inpatient/combined case parquet (LFS)
- Add nested CLAUDE.md guides, pyrightconfig, and test updates
2026-06-21 17:35:03 +08:00
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def _load_parquet(path: Path) -> pd.DataFrame:
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feat: add reports center, admin drill-down, disease filter + bug fixes + perf optimization
Frontend features:
- 报表中心 (ReportsCenter): list/detail views, diagnosis breakdown chart, CSV export
- 多级行政下钻 (AdminBreadcrumb): 湖北省→武汉市→区→街道 hierarchical drill-down
- 按病种筛选 (DiseaseFilter): multi-select diagnosis filter on monitoring + reports pages
Backend:
- Add /forecast/{days} endpoint, diagnosis filter params on cases endpoints
- Add /streets aggregation endpoint, enrich reports with real case data
- Extract shared case_loader module
Bug fixes (14):
- Fix missing /risk/forecast route (404), historyApi pointing to non-existent router
- Fix min_risk filter silently ignored in insights/hotspots
- Fix type mismatches: CaseTrendResponse, CaseStatsResponse shapes
- Fix silent .catch(() => {}) swallowing errors, fetchAlerts not clearing stale state
- Fix lru_cache caching exceptions, generateReport used cachedGet for write op
- Fix missing useEffect deps in Insights, DistrictComparison, ReportsCenter
Performance (9):
- Zustand selectors across 9 components (eliminate re-render cascades)
- Fix districtCases.sort() mutating store state, inline IIFE → memo'd component
- CaseLocationMap: React.memo, race protection, correct deps
- AlertCard: stable callbacks, TimelinePlayer: useMemo, TopNav: clock isolation
- SideNav: modules array to module scope, DiseaseFilter: memoized filter
2026-06-08 18:40:08 +08:00
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key = str(path)
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if key not in _parquet_cache:
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_parquet_cache[key] = pd.read_parquet(path)
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return _parquet_cache[key]
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2026-06-05 02:27:10 +08:00
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feat: add analysis pages and raster risk map
Ship a new app version with broader analytics, restructured
dashboards, and a server-rendered risk map.
Frontend:
- Add Overview, Demographic, Disease, and Environmental Health
analysis pages
- Add AnomalyMarkers, CalendarHeatmap, and MetricHeatmapTable
components
- Rebuild Alerts map onto server-rendered raster risk tiles;
expand Monitoring, Trend, and District Comparison views
- Extend API client, stores, and TypeScript types
Backend:
- Add environment router (pollutants, lag correlations)
- Add risk_raster util serving XYZ 100m risk tiles
- Expand cases endpoints (demographics, seasonality, diagnoses)
and insights; harden auth and file-based loaders
Data & tooling:
- Add processed outpatient/inpatient/combined case parquet (LFS)
- Add nested CLAUDE.md guides, pyrightconfig, and test updates
2026-06-21 17:35:03 +08:00
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def _compute_historical_aggregation(
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start: datetime,
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end: datetime,
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aggregation: str,
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district: Optional[str],
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) -> HistoricalAggregationResponse:
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"""Run the full pandas aggregation pipeline (called in thread pool)."""
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2026-06-05 02:27:10 +08:00
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try:
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2026-06-21 20:24:26 +08:00
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cases_df = load_cases_by_district_daily()
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2026-06-05 02:27:10 +08:00
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except FileNotFoundError:
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return HistoricalAggregationResponse(
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aggregations=[], total_records=0,
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feat: add analysis pages and raster risk map
Ship a new app version with broader analytics, restructured
dashboards, and a server-rendered risk map.
Frontend:
- Add Overview, Demographic, Disease, and Environmental Health
analysis pages
- Add AnomalyMarkers, CalendarHeatmap, and MetricHeatmapTable
components
- Rebuild Alerts map onto server-rendered raster risk tiles;
expand Monitoring, Trend, and District Comparison views
- Extend API client, stores, and TypeScript types
Backend:
- Add environment router (pollutants, lag correlations)
- Add risk_raster util serving XYZ 100m risk tiles
- Expand cases endpoints (demographics, seasonality, diagnoses)
and insights; harden auth and file-based loaders
Data & tooling:
- Add processed outpatient/inpatient/combined case parquet (LFS)
- Add nested CLAUDE.md guides, pyrightconfig, and test updates
2026-06-21 17:35:03 +08:00
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date_range=(start.strftime("%Y-%m-%d"), end.strftime("%Y-%m-%d")),
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timestamp=datetime.now().isoformat(),
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2026-06-05 02:27:10 +08:00
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)
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feat: Initial CBPOA commit — 武汉儿童呼吸疾病风险评估系统
Context: Build a spatial risk assessment system correlating air quality
data with children's respiratory disease incidence across Wuhan.
Approach: FastAPI backend serving PostGIS spatial queries, React
frontend with Deck.gl maps, and a PyTorch SpatialTemporalGCN pipeline
for multi-day (1d/3d/7d) risk prediction.
Changes:
- backend/ — FastAPI API with auth (JWT), alerts, risk analysis,
geocoded case data, grid statistics, and report endpoints
- frontend/ — React dashboard with interactive risk maps, alert
monitoring, district comparison charts, and timeline player
- models/ — SpatialTemporalGCN model with trained weights and ONNX
export for inference
- scripts/ — ETL pipeline for weather + medical data, grid generation,
feature engineering, training, and daily inference
- deploy/ — Docker Compose configs for backend, frontend, and MLflow
- docs/ — API docs, deployment guide, user guide, and code review
Impact: Enables spatial risk visualization, alert monitoring, and
ML-driven health risk forecasting for environmental health teams.
2026-06-05 02:13:49 +08:00
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cases_df['date'] = pd.to_datetime(cases_df['date'])
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filtered_cases = cases_df[
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(cases_df['date'] >= start) &
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(cases_df['date'] <= end)
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]
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if district:
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filtered_cases = filtered_cases[
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filtered_cases['district'].str.contains(district.replace('区', ''), na=False, regex=False)
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]
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if aggregation == "weekly":
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feat: add analysis pages and raster risk map
Ship a new app version with broader analytics, restructured
dashboards, and a server-rendered risk map.
Frontend:
- Add Overview, Demographic, Disease, and Environmental Health
analysis pages
- Add AnomalyMarkers, CalendarHeatmap, and MetricHeatmapTable
components
- Rebuild Alerts map onto server-rendered raster risk tiles;
expand Monitoring, Trend, and District Comparison views
- Extend API client, stores, and TypeScript types
Backend:
- Add environment router (pollutants, lag correlations)
- Add risk_raster util serving XYZ 100m risk tiles
- Expand cases endpoints (demographics, seasonality, diagnoses)
and insights; harden auth and file-based loaders
Data & tooling:
- Add processed outpatient/inpatient/combined case parquet (LFS)
- Add nested CLAUDE.md guides, pyrightconfig, and test updates
2026-06-21 17:35:03 +08:00
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filtered_cases = filtered_cases.copy()
|
feat: Initial CBPOA commit — 武汉儿童呼吸疾病风险评估系统
Context: Build a spatial risk assessment system correlating air quality
data with children's respiratory disease incidence across Wuhan.
Approach: FastAPI backend serving PostGIS spatial queries, React
frontend with Deck.gl maps, and a PyTorch SpatialTemporalGCN pipeline
for multi-day (1d/3d/7d) risk prediction.
Changes:
- backend/ — FastAPI API with auth (JWT), alerts, risk analysis,
geocoded case data, grid statistics, and report endpoints
- frontend/ — React dashboard with interactive risk maps, alert
monitoring, district comparison charts, and timeline player
- models/ — SpatialTemporalGCN model with trained weights and ONNX
export for inference
- scripts/ — ETL pipeline for weather + medical data, grid generation,
feature engineering, training, and daily inference
- deploy/ — Docker Compose configs for backend, frontend, and MLflow
- docs/ — API docs, deployment guide, user guide, and code review
Impact: Enables spatial risk visualization, alert monitoring, and
ML-driven health risk forecasting for environmental health teams.
2026-06-05 02:13:49 +08:00
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filtered_cases['period'] = filtered_cases['date'].dt.to_period('W').astype(str)
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grouped = filtered_cases.groupby(['period', 'district']).agg({
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'total_cases': 'sum',
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'outpatient_count': 'sum',
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'inpatient_count': 'sum',
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}).reset_index()
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grouped['date'] = grouped['period']
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elif aggregation == "monthly":
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feat: add analysis pages and raster risk map
Ship a new app version with broader analytics, restructured
dashboards, and a server-rendered risk map.
Frontend:
- Add Overview, Demographic, Disease, and Environmental Health
analysis pages
- Add AnomalyMarkers, CalendarHeatmap, and MetricHeatmapTable
components
- Rebuild Alerts map onto server-rendered raster risk tiles;
expand Monitoring, Trend, and District Comparison views
- Extend API client, stores, and TypeScript types
Backend:
- Add environment router (pollutants, lag correlations)
- Add risk_raster util serving XYZ 100m risk tiles
- Expand cases endpoints (demographics, seasonality, diagnoses)
and insights; harden auth and file-based loaders
Data & tooling:
- Add processed outpatient/inpatient/combined case parquet (LFS)
- Add nested CLAUDE.md guides, pyrightconfig, and test updates
2026-06-21 17:35:03 +08:00
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filtered_cases = filtered_cases.copy()
|
feat: Initial CBPOA commit — 武汉儿童呼吸疾病风险评估系统
Context: Build a spatial risk assessment system correlating air quality
data with children's respiratory disease incidence across Wuhan.
Approach: FastAPI backend serving PostGIS spatial queries, React
frontend with Deck.gl maps, and a PyTorch SpatialTemporalGCN pipeline
for multi-day (1d/3d/7d) risk prediction.
Changes:
- backend/ — FastAPI API with auth (JWT), alerts, risk analysis,
geocoded case data, grid statistics, and report endpoints
- frontend/ — React dashboard with interactive risk maps, alert
monitoring, district comparison charts, and timeline player
- models/ — SpatialTemporalGCN model with trained weights and ONNX
export for inference
- scripts/ — ETL pipeline for weather + medical data, grid generation,
feature engineering, training, and daily inference
- deploy/ — Docker Compose configs for backend, frontend, and MLflow
- docs/ — API docs, deployment guide, user guide, and code review
Impact: Enables spatial risk visualization, alert monitoring, and
ML-driven health risk forecasting for environmental health teams.
2026-06-05 02:13:49 +08:00
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filtered_cases['period'] = filtered_cases['date'].dt.to_period('M').astype(str)
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grouped = filtered_cases.groupby(['period', 'district']).agg({
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'total_cases': 'sum',
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'outpatient_count': 'sum',
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'inpatient_count': 'sum',
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}).reset_index()
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grouped['date'] = grouped['period']
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else:
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grouped = filtered_cases.copy()
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grouped['date'] = grouped['date'].dt.strftime('%Y-%m-%d')
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2026-06-05 02:27:10 +08:00
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|
|
|
try:
|
|
|
|
|
|
weather_df = _load_parquet(PROJECT_ROOT / "processed" / "weather" / "station_daily_2022.parquet")
|
|
|
|
|
|
except FileNotFoundError:
|
feat: add analysis pages and raster risk map
Ship a new app version with broader analytics, restructured
dashboards, and a server-rendered risk map.
Frontend:
- Add Overview, Demographic, Disease, and Environmental Health
analysis pages
- Add AnomalyMarkers, CalendarHeatmap, and MetricHeatmapTable
components
- Rebuild Alerts map onto server-rendered raster risk tiles;
expand Monitoring, Trend, and District Comparison views
- Extend API client, stores, and TypeScript types
Backend:
- Add environment router (pollutants, lag correlations)
- Add risk_raster util serving XYZ 100m risk tiles
- Expand cases endpoints (demographics, seasonality, diagnoses)
and insights; harden auth and file-based loaders
Data & tooling:
- Add processed outpatient/inpatient/combined case parquet (LFS)
- Add nested CLAUDE.md guides, pyrightconfig, and test updates
2026-06-21 17:35:03 +08:00
|
|
|
|
weather_df = pd.DataFrame({'date': pd.Series(dtype='str'), 'AQI': pd.Series(dtype='float64'), 'PM25': pd.Series(dtype='float64'), 'PM10': pd.Series(dtype='float64')})
|
|
|
|
|
|
weather_df = weather_df.copy()
|
feat: Initial CBPOA commit — 武汉儿童呼吸疾病风险评估系统
Context: Build a spatial risk assessment system correlating air quality
data with children's respiratory disease incidence across Wuhan.
Approach: FastAPI backend serving PostGIS spatial queries, React
frontend with Deck.gl maps, and a PyTorch SpatialTemporalGCN pipeline
for multi-day (1d/3d/7d) risk prediction.
Changes:
- backend/ — FastAPI API with auth (JWT), alerts, risk analysis,
geocoded case data, grid statistics, and report endpoints
- frontend/ — React dashboard with interactive risk maps, alert
monitoring, district comparison charts, and timeline player
- models/ — SpatialTemporalGCN model with trained weights and ONNX
export for inference
- scripts/ — ETL pipeline for weather + medical data, grid generation,
feature engineering, training, and daily inference
- deploy/ — Docker Compose configs for backend, frontend, and MLflow
- docs/ — API docs, deployment guide, user guide, and code review
Impact: Enables spatial risk visualization, alert monitoring, and
ML-driven health risk forecasting for environmental health teams.
2026-06-05 02:13:49 +08:00
|
|
|
|
weather_df['date'] = pd.to_datetime(weather_df['date']).dt.strftime('%Y-%m-%d')
|
|
|
|
|
|
|
|
|
|
|
|
# Weather data doesn't have district - aggregate by date only
|
|
|
|
|
|
weather_agg = weather_df.groupby(['date']).agg({
|
|
|
|
|
|
'AQI': 'mean',
|
|
|
|
|
|
'PM25': 'mean',
|
|
|
|
|
|
'PM10': 'mean',
|
|
|
|
|
|
}).reset_index()
|
|
|
|
|
|
|
|
|
|
|
|
# Merge by date only
|
|
|
|
|
|
merged = grouped.merge(weather_agg, on=['date'], how='left')
|
|
|
|
|
|
|
|
|
|
|
|
aggregations = []
|
|
|
|
|
|
for _, row in merged.iterrows():
|
|
|
|
|
|
aggregations.append(DistrictAggregation(
|
feat: add analysis pages and raster risk map
Ship a new app version with broader analytics, restructured
dashboards, and a server-rendered risk map.
Frontend:
- Add Overview, Demographic, Disease, and Environmental Health
analysis pages
- Add AnomalyMarkers, CalendarHeatmap, and MetricHeatmapTable
components
- Rebuild Alerts map onto server-rendered raster risk tiles;
expand Monitoring, Trend, and District Comparison views
- Extend API client, stores, and TypeScript types
Backend:
- Add environment router (pollutants, lag correlations)
- Add risk_raster util serving XYZ 100m risk tiles
- Expand cases endpoints (demographics, seasonality, diagnoses)
and insights; harden auth and file-based loaders
Data & tooling:
- Add processed outpatient/inpatient/combined case parquet (LFS)
- Add nested CLAUDE.md guides, pyrightconfig, and test updates
2026-06-21 17:35:03 +08:00
|
|
|
|
district=str(row['district']),
|
feat: Initial CBPOA commit — 武汉儿童呼吸疾病风险评估系统
Context: Build a spatial risk assessment system correlating air quality
data with children's respiratory disease incidence across Wuhan.
Approach: FastAPI backend serving PostGIS spatial queries, React
frontend with Deck.gl maps, and a PyTorch SpatialTemporalGCN pipeline
for multi-day (1d/3d/7d) risk prediction.
Changes:
- backend/ — FastAPI API with auth (JWT), alerts, risk analysis,
geocoded case data, grid statistics, and report endpoints
- frontend/ — React dashboard with interactive risk maps, alert
monitoring, district comparison charts, and timeline player
- models/ — SpatialTemporalGCN model with trained weights and ONNX
export for inference
- scripts/ — ETL pipeline for weather + medical data, grid generation,
feature engineering, training, and daily inference
- deploy/ — Docker Compose configs for backend, frontend, and MLflow
- docs/ — API docs, deployment guide, user guide, and code review
Impact: Enables spatial risk visualization, alert monitoring, and
ML-driven health risk forecasting for environmental health teams.
2026-06-05 02:13:49 +08:00
|
|
|
|
date=str(row['date']),
|
|
|
|
|
|
total_cases=int(row['total_cases']),
|
|
|
|
|
|
outpatient_count=int(row['outpatient_count']),
|
|
|
|
|
|
inpatient_count=int(row['inpatient_count']),
|
feat: add analysis pages and raster risk map
Ship a new app version with broader analytics, restructured
dashboards, and a server-rendered risk map.
Frontend:
- Add Overview, Demographic, Disease, and Environmental Health
analysis pages
- Add AnomalyMarkers, CalendarHeatmap, and MetricHeatmapTable
components
- Rebuild Alerts map onto server-rendered raster risk tiles;
expand Monitoring, Trend, and District Comparison views
- Extend API client, stores, and TypeScript types
Backend:
- Add environment router (pollutants, lag correlations)
- Add risk_raster util serving XYZ 100m risk tiles
- Expand cases endpoints (demographics, seasonality, diagnoses)
and insights; harden auth and file-based loaders
Data & tooling:
- Add processed outpatient/inpatient/combined case parquet (LFS)
- Add nested CLAUDE.md guides, pyrightconfig, and test updates
2026-06-21 17:35:03 +08:00
|
|
|
|
avg_AQI=float(row['AQI']) if bool(pd.notna(row['AQI'])) else 0.0,
|
|
|
|
|
|
avg_PM25=float(row['PM25']) if bool(pd.notna(row['PM25'])) else 0.0,
|
|
|
|
|
|
avg_PM10=float(row['PM10']) if bool(pd.notna(row['PM10'])) else 0.0,
|
feat: Initial CBPOA commit — 武汉儿童呼吸疾病风险评估系统
Context: Build a spatial risk assessment system correlating air quality
data with children's respiratory disease incidence across Wuhan.
Approach: FastAPI backend serving PostGIS spatial queries, React
frontend with Deck.gl maps, and a PyTorch SpatialTemporalGCN pipeline
for multi-day (1d/3d/7d) risk prediction.
Changes:
- backend/ — FastAPI API with auth (JWT), alerts, risk analysis,
geocoded case data, grid statistics, and report endpoints
- frontend/ — React dashboard with interactive risk maps, alert
monitoring, district comparison charts, and timeline player
- models/ — SpatialTemporalGCN model with trained weights and ONNX
export for inference
- scripts/ — ETL pipeline for weather + medical data, grid generation,
feature engineering, training, and daily inference
- deploy/ — Docker Compose configs for backend, frontend, and MLflow
- docs/ — API docs, deployment guide, user guide, and code review
Impact: Enables spatial risk visualization, alert monitoring, and
ML-driven health risk forecasting for environmental health teams.
2026-06-05 02:13:49 +08:00
|
|
|
|
))
|
|
|
|
|
|
|
|
|
|
|
|
return HistoricalAggregationResponse(
|
|
|
|
|
|
aggregations=aggregations,
|
|
|
|
|
|
total_records=len(aggregations),
|
feat: add analysis pages and raster risk map
Ship a new app version with broader analytics, restructured
dashboards, and a server-rendered risk map.
Frontend:
- Add Overview, Demographic, Disease, and Environmental Health
analysis pages
- Add AnomalyMarkers, CalendarHeatmap, and MetricHeatmapTable
components
- Rebuild Alerts map onto server-rendered raster risk tiles;
expand Monitoring, Trend, and District Comparison views
- Extend API client, stores, and TypeScript types
Backend:
- Add environment router (pollutants, lag correlations)
- Add risk_raster util serving XYZ 100m risk tiles
- Expand cases endpoints (demographics, seasonality, diagnoses)
and insights; harden auth and file-based loaders
Data & tooling:
- Add processed outpatient/inpatient/combined case parquet (LFS)
- Add nested CLAUDE.md guides, pyrightconfig, and test updates
2026-06-21 17:35:03 +08:00
|
|
|
|
date_range=(start.strftime("%Y-%m-%d"), end.strftime("%Y-%m-%d")),
|
feat: Initial CBPOA commit — 武汉儿童呼吸疾病风险评估系统
Context: Build a spatial risk assessment system correlating air quality
data with children's respiratory disease incidence across Wuhan.
Approach: FastAPI backend serving PostGIS spatial queries, React
frontend with Deck.gl maps, and a PyTorch SpatialTemporalGCN pipeline
for multi-day (1d/3d/7d) risk prediction.
Changes:
- backend/ — FastAPI API with auth (JWT), alerts, risk analysis,
geocoded case data, grid statistics, and report endpoints
- frontend/ — React dashboard with interactive risk maps, alert
monitoring, district comparison charts, and timeline player
- models/ — SpatialTemporalGCN model with trained weights and ONNX
export for inference
- scripts/ — ETL pipeline for weather + medical data, grid generation,
feature engineering, training, and daily inference
- deploy/ — Docker Compose configs for backend, frontend, and MLflow
- docs/ — API docs, deployment guide, user guide, and code review
Impact: Enables spatial risk visualization, alert monitoring, and
ML-driven health risk forecasting for environmental health teams.
2026-06-05 02:13:49 +08:00
|
|
|
|
timestamp=datetime.now().isoformat(),
|
|
|
|
|
|
)
|
|
|
|
|
|
|
|
|
|
|
|
|
feat: add analysis pages and raster risk map
Ship a new app version with broader analytics, restructured
dashboards, and a server-rendered risk map.
Frontend:
- Add Overview, Demographic, Disease, and Environmental Health
analysis pages
- Add AnomalyMarkers, CalendarHeatmap, and MetricHeatmapTable
components
- Rebuild Alerts map onto server-rendered raster risk tiles;
expand Monitoring, Trend, and District Comparison views
- Extend API client, stores, and TypeScript types
Backend:
- Add environment router (pollutants, lag correlations)
- Add risk_raster util serving XYZ 100m risk tiles
- Expand cases endpoints (demographics, seasonality, diagnoses)
and insights; harden auth and file-based loaders
Data & tooling:
- Add processed outpatient/inpatient/combined case parquet (LFS)
- Add nested CLAUDE.md guides, pyrightconfig, and test updates
2026-06-21 17:35:03 +08:00
|
|
|
|
@router.get("/history/aggregated", response_model=HistoricalAggregationResponse)
|
|
|
|
|
|
async def get_historical_aggregated(
|
|
|
|
|
|
start_date: str = Query(..., description="Start date (YYYY-MM-DD)"),
|
|
|
|
|
|
end_date: str = Query(..., description="End date (YYYY-MM-DD)"),
|
|
|
|
|
|
aggregation: str = Query("daily", description="Aggregation level: daily, weekly, monthly"),
|
|
|
|
|
|
district: Optional[str] = Query(None, description="Filter by district name"),
|
feat: Initial CBPOA commit — 武汉儿童呼吸疾病风险评估系统
Context: Build a spatial risk assessment system correlating air quality
data with children's respiratory disease incidence across Wuhan.
Approach: FastAPI backend serving PostGIS spatial queries, React
frontend with Deck.gl maps, and a PyTorch SpatialTemporalGCN pipeline
for multi-day (1d/3d/7d) risk prediction.
Changes:
- backend/ — FastAPI API with auth (JWT), alerts, risk analysis,
geocoded case data, grid statistics, and report endpoints
- frontend/ — React dashboard with interactive risk maps, alert
monitoring, district comparison charts, and timeline player
- models/ — SpatialTemporalGCN model with trained weights and ONNX
export for inference
- scripts/ — ETL pipeline for weather + medical data, grid generation,
feature engineering, training, and daily inference
- deploy/ — Docker Compose configs for backend, frontend, and MLflow
- docs/ — API docs, deployment guide, user guide, and code review
Impact: Enables spatial risk visualization, alert monitoring, and
ML-driven health risk forecasting for environmental health teams.
2026-06-05 02:13:49 +08:00
|
|
|
|
):
|
|
|
|
|
|
"""
|
feat: add analysis pages and raster risk map
Ship a new app version with broader analytics, restructured
dashboards, and a server-rendered risk map.
Frontend:
- Add Overview, Demographic, Disease, and Environmental Health
analysis pages
- Add AnomalyMarkers, CalendarHeatmap, and MetricHeatmapTable
components
- Rebuild Alerts map onto server-rendered raster risk tiles;
expand Monitoring, Trend, and District Comparison views
- Extend API client, stores, and TypeScript types
Backend:
- Add environment router (pollutants, lag correlations)
- Add risk_raster util serving XYZ 100m risk tiles
- Expand cases endpoints (demographics, seasonality, diagnoses)
and insights; harden auth and file-based loaders
Data & tooling:
- Add processed outpatient/inpatient/combined case parquet (LFS)
- Add nested CLAUDE.md guides, pyrightconfig, and test updates
2026-06-21 17:35:03 +08:00
|
|
|
|
Historical data aggregation API.
|
feat: Initial CBPOA commit — 武汉儿童呼吸疾病风险评估系统
Context: Build a spatial risk assessment system correlating air quality
data with children's respiratory disease incidence across Wuhan.
Approach: FastAPI backend serving PostGIS spatial queries, React
frontend with Deck.gl maps, and a PyTorch SpatialTemporalGCN pipeline
for multi-day (1d/3d/7d) risk prediction.
Changes:
- backend/ — FastAPI API with auth (JWT), alerts, risk analysis,
geocoded case data, grid statistics, and report endpoints
- frontend/ — React dashboard with interactive risk maps, alert
monitoring, district comparison charts, and timeline player
- models/ — SpatialTemporalGCN model with trained weights and ONNX
export for inference
- scripts/ — ETL pipeline for weather + medical data, grid generation,
feature engineering, training, and daily inference
- deploy/ — Docker Compose configs for backend, frontend, and MLflow
- docs/ — API docs, deployment guide, user guide, and code review
Impact: Enables spatial risk visualization, alert monitoring, and
ML-driven health risk forecasting for environmental health teams.
2026-06-05 02:13:49 +08:00
|
|
|
|
|
feat: add analysis pages and raster risk map
Ship a new app version with broader analytics, restructured
dashboards, and a server-rendered risk map.
Frontend:
- Add Overview, Demographic, Disease, and Environmental Health
analysis pages
- Add AnomalyMarkers, CalendarHeatmap, and MetricHeatmapTable
components
- Rebuild Alerts map onto server-rendered raster risk tiles;
expand Monitoring, Trend, and District Comparison views
- Extend API client, stores, and TypeScript types
Backend:
- Add environment router (pollutants, lag correlations)
- Add risk_raster util serving XYZ 100m risk tiles
- Expand cases endpoints (demographics, seasonality, diagnoses)
and insights; harden auth and file-based loaders
Data & tooling:
- Add processed outpatient/inpatient/combined case parquet (LFS)
- Add nested CLAUDE.md guides, pyrightconfig, and test updates
2026-06-21 17:35:03 +08:00
|
|
|
|
Returns aggregated case and weather data by district and date.
|
|
|
|
|
|
Pandas processing runs in a thread pool to avoid blocking the async event loop.
|
|
|
|
|
|
"""
|
feat: Initial CBPOA commit — 武汉儿童呼吸疾病风险评估系统
Context: Build a spatial risk assessment system correlating air quality
data with children's respiratory disease incidence across Wuhan.
Approach: FastAPI backend serving PostGIS spatial queries, React
frontend with Deck.gl maps, and a PyTorch SpatialTemporalGCN pipeline
for multi-day (1d/3d/7d) risk prediction.
Changes:
- backend/ — FastAPI API with auth (JWT), alerts, risk analysis,
geocoded case data, grid statistics, and report endpoints
- frontend/ — React dashboard with interactive risk maps, alert
monitoring, district comparison charts, and timeline player
- models/ — SpatialTemporalGCN model with trained weights and ONNX
export for inference
- scripts/ — ETL pipeline for weather + medical data, grid generation,
feature engineering, training, and daily inference
- deploy/ — Docker Compose configs for backend, frontend, and MLflow
- docs/ — API docs, deployment guide, user guide, and code review
Impact: Enables spatial risk visualization, alert monitoring, and
ML-driven health risk forecasting for environmental health teams.
2026-06-05 02:13:49 +08:00
|
|
|
|
try:
|
feat: add analysis pages and raster risk map
Ship a new app version with broader analytics, restructured
dashboards, and a server-rendered risk map.
Frontend:
- Add Overview, Demographic, Disease, and Environmental Health
analysis pages
- Add AnomalyMarkers, CalendarHeatmap, and MetricHeatmapTable
components
- Rebuild Alerts map onto server-rendered raster risk tiles;
expand Monitoring, Trend, and District Comparison views
- Extend API client, stores, and TypeScript types
Backend:
- Add environment router (pollutants, lag correlations)
- Add risk_raster util serving XYZ 100m risk tiles
- Expand cases endpoints (demographics, seasonality, diagnoses)
and insights; harden auth and file-based loaders
Data & tooling:
- Add processed outpatient/inpatient/combined case parquet (LFS)
- Add nested CLAUDE.md guides, pyrightconfig, and test updates
2026-06-21 17:35:03 +08:00
|
|
|
|
start = datetime.strptime(start_date, "%Y-%m-%d")
|
|
|
|
|
|
end = datetime.strptime(end_date, "%Y-%m-%d")
|
|
|
|
|
|
except ValueError:
|
|
|
|
|
|
raise HTTPException(status_code=400, detail="Invalid date format. Use YYYY-MM-DD")
|
|
|
|
|
|
|
|
|
|
|
|
if (end - start).days > 365:
|
|
|
|
|
|
raise HTTPException(status_code=400, detail="Date range exceeds 365 days")
|
|
|
|
|
|
|
|
|
|
|
|
# Offload all pandas I/O and processing to a thread pool
|
|
|
|
|
|
# to prevent blocking the async event loop
|
|
|
|
|
|
return await asyncio.to_thread(
|
|
|
|
|
|
_compute_historical_aggregation, start, end, aggregation, district
|
|
|
|
|
|
)
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
@lru_cache(maxsize=1)
|
|
|
|
|
|
def _grid_geojson_base():
|
|
|
|
|
|
"""Date-independent base merge: grid centroid + district + real population.
|
feat: Initial CBPOA commit — 武汉儿童呼吸疾病风险评估系统
Context: Build a spatial risk assessment system correlating air quality
data with children's respiratory disease incidence across Wuhan.
Approach: FastAPI backend serving PostGIS spatial queries, React
frontend with Deck.gl maps, and a PyTorch SpatialTemporalGCN pipeline
for multi-day (1d/3d/7d) risk prediction.
Changes:
- backend/ — FastAPI API with auth (JWT), alerts, risk analysis,
geocoded case data, grid statistics, and report endpoints
- frontend/ — React dashboard with interactive risk maps, alert
monitoring, district comparison charts, and timeline player
- models/ — SpatialTemporalGCN model with trained weights and ONNX
export for inference
- scripts/ — ETL pipeline for weather + medical data, grid generation,
feature engineering, training, and daily inference
- deploy/ — Docker Compose configs for backend, frontend, and MLflow
- docs/ — API docs, deployment guide, user guide, and code review
Impact: Enables spatial risk visualization, alert monitoring, and
ML-driven health risk forecasting for environmental health teams.
2026-06-05 02:13:49 +08:00
|
|
|
|
|
feat: add analysis pages and raster risk map
Ship a new app version with broader analytics, restructured
dashboards, and a server-rendered risk map.
Frontend:
- Add Overview, Demographic, Disease, and Environmental Health
analysis pages
- Add AnomalyMarkers, CalendarHeatmap, and MetricHeatmapTable
components
- Rebuild Alerts map onto server-rendered raster risk tiles;
expand Monitoring, Trend, and District Comparison views
- Extend API client, stores, and TypeScript types
Backend:
- Add environment router (pollutants, lag correlations)
- Add risk_raster util serving XYZ 100m risk tiles
- Expand cases endpoints (demographics, seasonality, diagnoses)
and insights; harden auth and file-based loaders
Data & tooling:
- Add processed outpatient/inpatient/combined case parquet (LFS)
- Add nested CLAUDE.md guides, pyrightconfig, and test updates
2026-06-21 17:35:03 +08:00
|
|
|
|
Merged once and cached (the source frames are ~1M rows each, so the join
|
|
|
|
|
|
must not run per request). Raises FileNotFoundError if the core grid files
|
|
|
|
|
|
are missing (caller handles it).
|
|
|
|
|
|
"""
|
|
|
|
|
|
import pandas as pd
|
|
|
|
|
|
grid_df = _load_parquet(PROJECT_ROOT / "processed" / "grid_100m_index.parquet")
|
|
|
|
|
|
district_map = _load_parquet(PROJECT_ROOT / "processed" / "grid_district_mapping.parquet")
|
|
|
|
|
|
base = grid_df.merge(district_map, on='grid_id', how='left')
|
feat: Initial CBPOA commit — 武汉儿童呼吸疾病风险评估系统
Context: Build a spatial risk assessment system correlating air quality
data with children's respiratory disease incidence across Wuhan.
Approach: FastAPI backend serving PostGIS spatial queries, React
frontend with Deck.gl maps, and a PyTorch SpatialTemporalGCN pipeline
for multi-day (1d/3d/7d) risk prediction.
Changes:
- backend/ — FastAPI API with auth (JWT), alerts, risk analysis,
geocoded case data, grid statistics, and report endpoints
- frontend/ — React dashboard with interactive risk maps, alert
monitoring, district comparison charts, and timeline player
- models/ — SpatialTemporalGCN model with trained weights and ONNX
export for inference
- scripts/ — ETL pipeline for weather + medical data, grid generation,
feature engineering, training, and daily inference
- deploy/ — Docker Compose configs for backend, frontend, and MLflow
- docs/ — API docs, deployment guide, user guide, and code review
Impact: Enables spatial risk visualization, alert monitoring, and
ML-driven health risk forecasting for environmental health teams.
2026-06-05 02:13:49 +08:00
|
|
|
|
try:
|
feat: add analysis pages and raster risk map
Ship a new app version with broader analytics, restructured
dashboards, and a server-rendered risk map.
Frontend:
- Add Overview, Demographic, Disease, and Environmental Health
analysis pages
- Add AnomalyMarkers, CalendarHeatmap, and MetricHeatmapTable
components
- Rebuild Alerts map onto server-rendered raster risk tiles;
expand Monitoring, Trend, and District Comparison views
- Extend API client, stores, and TypeScript types
Backend:
- Add environment router (pollutants, lag correlations)
- Add risk_raster util serving XYZ 100m risk tiles
- Expand cases endpoints (demographics, seasonality, diagnoses)
and insights; harden auth and file-based loaders
Data & tooling:
- Add processed outpatient/inpatient/combined case parquet (LFS)
- Add nested CLAUDE.md guides, pyrightconfig, and test updates
2026-06-21 17:35:03 +08:00
|
|
|
|
pop_df = _load_parquet(PROJECT_ROOT / "processed" / "grid_100m_with_dem_pop.parquet")
|
|
|
|
|
|
base = base.merge(pop_df[['grid_id', 'population_density']], on='grid_id', how='left')
|
feat: Initial CBPOA commit — 武汉儿童呼吸疾病风险评估系统
Context: Build a spatial risk assessment system correlating air quality
data with children's respiratory disease incidence across Wuhan.
Approach: FastAPI backend serving PostGIS spatial queries, React
frontend with Deck.gl maps, and a PyTorch SpatialTemporalGCN pipeline
for multi-day (1d/3d/7d) risk prediction.
Changes:
- backend/ — FastAPI API with auth (JWT), alerts, risk analysis,
geocoded case data, grid statistics, and report endpoints
- frontend/ — React dashboard with interactive risk maps, alert
monitoring, district comparison charts, and timeline player
- models/ — SpatialTemporalGCN model with trained weights and ONNX
export for inference
- scripts/ — ETL pipeline for weather + medical data, grid generation,
feature engineering, training, and daily inference
- deploy/ — Docker Compose configs for backend, frontend, and MLflow
- docs/ — API docs, deployment guide, user guide, and code review
Impact: Enables spatial risk visualization, alert monitoring, and
ML-driven health risk forecasting for environmental health teams.
2026-06-05 02:13:49 +08:00
|
|
|
|
except FileNotFoundError:
|
feat: add analysis pages and raster risk map
Ship a new app version with broader analytics, restructured
dashboards, and a server-rendered risk map.
Frontend:
- Add Overview, Demographic, Disease, and Environmental Health
analysis pages
- Add AnomalyMarkers, CalendarHeatmap, and MetricHeatmapTable
components
- Rebuild Alerts map onto server-rendered raster risk tiles;
expand Monitoring, Trend, and District Comparison views
- Extend API client, stores, and TypeScript types
Backend:
- Add environment router (pollutants, lag correlations)
- Add risk_raster util serving XYZ 100m risk tiles
- Expand cases endpoints (demographics, seasonality, diagnoses)
and insights; harden auth and file-based loaders
Data & tooling:
- Add processed outpatient/inpatient/combined case parquet (LFS)
- Add nested CLAUDE.md guides, pyrightconfig, and test updates
2026-06-21 17:35:03 +08:00
|
|
|
|
base['population_density'] = 0.0
|
|
|
|
|
|
base['population_density'] = base['population_density'].fillna(0.0)
|
|
|
|
|
|
return base
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
def _risk_level_of(v: float) -> str:
|
|
|
|
|
|
if v >= 0.7:
|
|
|
|
|
|
return "high"
|
|
|
|
|
|
if v >= 0.5:
|
|
|
|
|
|
return "medium"
|
|
|
|
|
|
if v >= 0.3:
|
|
|
|
|
|
return "medium_low"
|
|
|
|
|
|
return "low"
|
|
|
|
|
|
|
feat: Initial CBPOA commit — 武汉儿童呼吸疾病风险评估系统
Context: Build a spatial risk assessment system correlating air quality
data with children's respiratory disease incidence across Wuhan.
Approach: FastAPI backend serving PostGIS spatial queries, React
frontend with Deck.gl maps, and a PyTorch SpatialTemporalGCN pipeline
for multi-day (1d/3d/7d) risk prediction.
Changes:
- backend/ — FastAPI API with auth (JWT), alerts, risk analysis,
geocoded case data, grid statistics, and report endpoints
- frontend/ — React dashboard with interactive risk maps, alert
monitoring, district comparison charts, and timeline player
- models/ — SpatialTemporalGCN model with trained weights and ONNX
export for inference
- scripts/ — ETL pipeline for weather + medical data, grid generation,
feature engineering, training, and daily inference
- deploy/ — Docker Compose configs for backend, frontend, and MLflow
- docs/ — API docs, deployment guide, user guide, and code review
Impact: Enables spatial risk visualization, alert monitoring, and
ML-driven health risk forecasting for environmental health teams.
2026-06-05 02:13:49 +08:00
|
|
|
|
|
feat: add analysis pages and raster risk map
Ship a new app version with broader analytics, restructured
dashboards, and a server-rendered risk map.
Frontend:
- Add Overview, Demographic, Disease, and Environmental Health
analysis pages
- Add AnomalyMarkers, CalendarHeatmap, and MetricHeatmapTable
components
- Rebuild Alerts map onto server-rendered raster risk tiles;
expand Monitoring, Trend, and District Comparison views
- Extend API client, stores, and TypeScript types
Backend:
- Add environment router (pollutants, lag correlations)
- Add risk_raster util serving XYZ 100m risk tiles
- Expand cases endpoints (demographics, seasonality, diagnoses)
and insights; harden auth and file-based loaders
Data & tooling:
- Add processed outpatient/inpatient/combined case parquet (LFS)
- Add nested CLAUDE.md guides, pyrightconfig, and test updates
2026-06-21 17:35:03 +08:00
|
|
|
|
@lru_cache(maxsize=32)
|
|
|
|
|
|
def _grids_geojson_body(date: str, district: Optional[str], risk_level: Optional[str]) -> str:
|
|
|
|
|
|
"""Build + serialize the grid GeoJSON once per (date, district, risk_level).
|
feat: Initial CBPOA commit — 武汉儿童呼吸疾病风险评估系统
Context: Build a spatial risk assessment system correlating air quality
data with children's respiratory disease incidence across Wuhan.
Approach: FastAPI backend serving PostGIS spatial queries, React
frontend with Deck.gl maps, and a PyTorch SpatialTemporalGCN pipeline
for multi-day (1d/3d/7d) risk prediction.
Changes:
- backend/ — FastAPI API with auth (JWT), alerts, risk analysis,
geocoded case data, grid statistics, and report endpoints
- frontend/ — React dashboard with interactive risk maps, alert
monitoring, district comparison charts, and timeline player
- models/ — SpatialTemporalGCN model with trained weights and ONNX
export for inference
- scripts/ — ETL pipeline for weather + medical data, grid generation,
feature engineering, training, and daily inference
- deploy/ — Docker Compose configs for backend, frontend, and MLflow
- docs/ — API docs, deployment guide, user guide, and code review
Impact: Enables spatial risk visualization, alert monitoring, and
ML-driven health risk forecasting for environmental health teams.
2026-06-05 02:13:49 +08:00
|
|
|
|
|
feat: add analysis pages and raster risk map
Ship a new app version with broader analytics, restructured
dashboards, and a server-rendered risk map.
Frontend:
- Add Overview, Demographic, Disease, and Environmental Health
analysis pages
- Add AnomalyMarkers, CalendarHeatmap, and MetricHeatmapTable
components
- Rebuild Alerts map onto server-rendered raster risk tiles;
expand Monitoring, Trend, and District Comparison views
- Extend API client, stores, and TypeScript types
Backend:
- Add environment router (pollutants, lag correlations)
- Add risk_raster util serving XYZ 100m risk tiles
- Expand cases endpoints (demographics, seasonality, diagnoses)
and insights; harden auth and file-based loaders
Data & tooling:
- Add processed outpatient/inpatient/combined case parquet (LFS)
- Add nested CLAUDE.md guides, pyrightconfig, and test updates
2026-06-21 17:35:03 +08:00
|
|
|
|
Risk is computed vectorised over the full grid (no per-row Python loop) and
|
|
|
|
|
|
the highest-risk grids are returned as hotspots, so the map shows real
|
|
|
|
|
|
high→low variation. Cached, so warm calls are near-instant. Raises
|
|
|
|
|
|
FileNotFoundError if the core grid files are missing.
|
|
|
|
|
|
"""
|
|
|
|
|
|
merged = _grid_geojson_base()
|
feat: Initial CBPOA commit — 武汉儿童呼吸疾病风险评估系统
Context: Build a spatial risk assessment system correlating air quality
data with children's respiratory disease incidence across Wuhan.
Approach: FastAPI backend serving PostGIS spatial queries, React
frontend with Deck.gl maps, and a PyTorch SpatialTemporalGCN pipeline
for multi-day (1d/3d/7d) risk prediction.
Changes:
- backend/ — FastAPI API with auth (JWT), alerts, risk analysis,
geocoded case data, grid statistics, and report endpoints
- frontend/ — React dashboard with interactive risk maps, alert
monitoring, district comparison charts, and timeline player
- models/ — SpatialTemporalGCN model with trained weights and ONNX
export for inference
- scripts/ — ETL pipeline for weather + medical data, grid generation,
feature engineering, training, and daily inference
- deploy/ — Docker Compose configs for backend, frontend, and MLflow
- docs/ — API docs, deployment guide, user guide, and code review
Impact: Enables spatial risk visualization, alert monitoring, and
ML-driven health risk forecasting for environmental health teams.
2026-06-05 02:13:49 +08:00
|
|
|
|
if district:
|
|
|
|
|
|
merged = merged[merged['district_name'].str.contains(district.replace('区', ''), na=False, regex=False)]
|
|
|
|
|
|
|
2026-06-21 20:24:26 +08:00
|
|
|
|
cases_df = load_cases_by_district_daily()
|
feat: Initial CBPOA commit — 武汉儿童呼吸疾病风险评估系统
Context: Build a spatial risk assessment system correlating air quality
data with children's respiratory disease incidence across Wuhan.
Approach: FastAPI backend serving PostGIS spatial queries, React
frontend with Deck.gl maps, and a PyTorch SpatialTemporalGCN pipeline
for multi-day (1d/3d/7d) risk prediction.
Changes:
- backend/ — FastAPI API with auth (JWT), alerts, risk analysis,
geocoded case data, grid statistics, and report endpoints
- frontend/ — React dashboard with interactive risk maps, alert
monitoring, district comparison charts, and timeline player
- models/ — SpatialTemporalGCN model with trained weights and ONNX
export for inference
- scripts/ — ETL pipeline for weather + medical data, grid generation,
feature engineering, training, and daily inference
- deploy/ — Docker Compose configs for backend, frontend, and MLflow
- docs/ — API docs, deployment guide, user guide, and code review
Impact: Enables spatial risk visualization, alert monitoring, and
ML-driven health risk forecasting for environmental health teams.
2026-06-05 02:13:49 +08:00
|
|
|
|
cases_df['date'] = pd.to_datetime(cases_df['date']).dt.strftime('%Y-%m-%d')
|
|
|
|
|
|
cases_df = cases_df[cases_df['date'] == date]
|
|
|
|
|
|
|
feat: add analysis pages and raster risk map
Ship a new app version with broader analytics, restructured
dashboards, and a server-rendered risk map.
Frontend:
- Add Overview, Demographic, Disease, and Environmental Health
analysis pages
- Add AnomalyMarkers, CalendarHeatmap, and MetricHeatmapTable
components
- Rebuild Alerts map onto server-rendered raster risk tiles;
expand Monitoring, Trend, and District Comparison views
- Extend API client, stores, and TypeScript types
Backend:
- Add environment router (pollutants, lag correlations)
- Add risk_raster util serving XYZ 100m risk tiles
- Expand cases endpoints (demographics, seasonality, diagnoses)
and insights; harden auth and file-based loaders
Data & tooling:
- Add processed outpatient/inpatient/combined case parquet (LFS)
- Add nested CLAUDE.md guides, pyrightconfig, and test updates
2026-06-21 17:35:03 +08:00
|
|
|
|
# Normalise district case load to 0..1 across districts for this date.
|
|
|
|
|
|
max_district_cases = float(cases_df['total_cases'].max()) if len(cases_df) else 0.0
|
|
|
|
|
|
if max_district_cases <= 0:
|
|
|
|
|
|
max_district_cases = 1.0
|
|
|
|
|
|
|
|
|
|
|
|
merged = merged.merge(cases_df[['district', 'total_cases']], left_on='district_name', right_on='district', how='left')
|
|
|
|
|
|
merged = merged.copy()
|
feat: Initial CBPOA commit — 武汉儿童呼吸疾病风险评估系统
Context: Build a spatial risk assessment system correlating air quality
data with children's respiratory disease incidence across Wuhan.
Approach: FastAPI backend serving PostGIS spatial queries, React
frontend with Deck.gl maps, and a PyTorch SpatialTemporalGCN pipeline
for multi-day (1d/3d/7d) risk prediction.
Changes:
- backend/ — FastAPI API with auth (JWT), alerts, risk analysis,
geocoded case data, grid statistics, and report endpoints
- frontend/ — React dashboard with interactive risk maps, alert
monitoring, district comparison charts, and timeline player
- models/ — SpatialTemporalGCN model with trained weights and ONNX
export for inference
- scripts/ — ETL pipeline for weather + medical data, grid generation,
feature engineering, training, and daily inference
- deploy/ — Docker Compose configs for backend, frontend, and MLflow
- docs/ — API docs, deployment guide, user guide, and code review
Impact: Enables spatial risk visualization, alert monitoring, and
ML-driven health risk forecasting for environmental health teams.
2026-06-05 02:13:49 +08:00
|
|
|
|
merged['total_cases'] = merged['total_cases'].fillna(0).astype(int)
|
feat: add analysis pages and raster risk map
Ship a new app version with broader analytics, restructured
dashboards, and a server-rendered risk map.
Frontend:
- Add Overview, Demographic, Disease, and Environmental Health
analysis pages
- Add AnomalyMarkers, CalendarHeatmap, and MetricHeatmapTable
components
- Rebuild Alerts map onto server-rendered raster risk tiles;
expand Monitoring, Trend, and District Comparison views
- Extend API client, stores, and TypeScript types
Backend:
- Add environment router (pollutants, lag correlations)
- Add risk_raster util serving XYZ 100m risk tiles
- Expand cases endpoints (demographics, seasonality, diagnoses)
and insights; harden auth and file-based loaders
Data & tooling:
- Add processed outpatient/inpatient/combined case parquet (LFS)
- Add nested CLAUDE.md guides, pyrightconfig, and test updates
2026-06-21 17:35:03 +08:00
|
|
|
|
merged['center_lon'] = pd.to_numeric(merged['center_lon'], errors='coerce').fillna(0.0)
|
|
|
|
|
|
merged['center_lat'] = pd.to_numeric(merged['center_lat'], errors='coerce').fillna(0.0)
|
|
|
|
|
|
merged['population_density'] = merged['population_density'].fillna(0.0).clip(lower=0.0)
|
feat: Initial CBPOA commit — 武汉儿童呼吸疾病风险评估系统
Context: Build a spatial risk assessment system correlating air quality
data with children's respiratory disease incidence across Wuhan.
Approach: FastAPI backend serving PostGIS spatial queries, React
frontend with Deck.gl maps, and a PyTorch SpatialTemporalGCN pipeline
for multi-day (1d/3d/7d) risk prediction.
Changes:
- backend/ — FastAPI API with auth (JWT), alerts, risk analysis,
geocoded case data, grid statistics, and report endpoints
- frontend/ — React dashboard with interactive risk maps, alert
monitoring, district comparison charts, and timeline player
- models/ — SpatialTemporalGCN model with trained weights and ONNX
export for inference
- scripts/ — ETL pipeline for weather + medical data, grid generation,
feature engineering, training, and daily inference
- deploy/ — Docker Compose configs for backend, frontend, and MLflow
- docs/ — API docs, deployment guide, user guide, and code review
Impact: Enables spatial risk visualization, alert monitoring, and
ML-driven health risk forecasting for environmental health teams.
2026-06-05 02:13:49 +08:00
|
|
|
|
|
feat: add analysis pages and raster risk map
Ship a new app version with broader analytics, restructured
dashboards, and a server-rendered risk map.
Frontend:
- Add Overview, Demographic, Disease, and Environmental Health
analysis pages
- Add AnomalyMarkers, CalendarHeatmap, and MetricHeatmapTable
components
- Rebuild Alerts map onto server-rendered raster risk tiles;
expand Monitoring, Trend, and District Comparison views
- Extend API client, stores, and TypeScript types
Backend:
- Add environment router (pollutants, lag correlations)
- Add risk_raster util serving XYZ 100m risk tiles
- Expand cases endpoints (demographics, seasonality, diagnoses)
and insights; harden auth and file-based loaders
Data & tooling:
- Add processed outpatient/inpatient/combined case parquet (LFS)
- Add nested CLAUDE.md guides, pyrightconfig, and test updates
2026-06-21 17:35:03 +08:00
|
|
|
|
# Drop grids without coordinates.
|
|
|
|
|
|
merged = merged[(merged['center_lon'] != 0.0) | (merged['center_lat'] != 0.0)]
|
|
|
|
|
|
|
|
|
|
|
|
# Demo risk model (vectorised): a district's relative case load × each grid's
|
|
|
|
|
|
# own population exposure. Sparse cells stay low; densely-populated cells in
|
|
|
|
|
|
# high-case districts rise toward 1.0.
|
|
|
|
|
|
district_load = (merged['total_cases'] / max_district_cases).clip(upper=1.0)
|
|
|
|
|
|
pop_factor = (merged['population_density'] / 50.0).clip(upper=1.0)
|
|
|
|
|
|
merged['risk_value'] = (0.1 + 0.85 * district_load * pop_factor).clip(upper=1.0).round(3)
|
|
|
|
|
|
|
|
|
|
|
|
# Show the highest-risk grids (hotspots), not arbitrary cells.
|
|
|
|
|
|
merged = merged.nlargest(10000, 'risk_value')
|
feat: Initial CBPOA commit — 武汉儿童呼吸疾病风险评估系统
Context: Build a spatial risk assessment system correlating air quality
data with children's respiratory disease incidence across Wuhan.
Approach: FastAPI backend serving PostGIS spatial queries, React
frontend with Deck.gl maps, and a PyTorch SpatialTemporalGCN pipeline
for multi-day (1d/3d/7d) risk prediction.
Changes:
- backend/ — FastAPI API with auth (JWT), alerts, risk analysis,
geocoded case data, grid statistics, and report endpoints
- frontend/ — React dashboard with interactive risk maps, alert
monitoring, district comparison charts, and timeline player
- models/ — SpatialTemporalGCN model with trained weights and ONNX
export for inference
- scripts/ — ETL pipeline for weather + medical data, grid generation,
feature engineering, training, and daily inference
- deploy/ — Docker Compose configs for backend, frontend, and MLflow
- docs/ — API docs, deployment guide, user guide, and code review
Impact: Enables spatial risk visualization, alert monitoring, and
ML-driven health risk forecasting for environmental health teams.
2026-06-05 02:13:49 +08:00
|
|
|
|
|
|
|
|
|
|
features = []
|
feat: add analysis pages and raster risk map
Ship a new app version with broader analytics, restructured
dashboards, and a server-rendered risk map.
Frontend:
- Add Overview, Demographic, Disease, and Environmental Health
analysis pages
- Add AnomalyMarkers, CalendarHeatmap, and MetricHeatmapTable
components
- Rebuild Alerts map onto server-rendered raster risk tiles;
expand Monitoring, Trend, and District Comparison views
- Extend API client, stores, and TypeScript types
Backend:
- Add environment router (pollutants, lag correlations)
- Add risk_raster util serving XYZ 100m risk tiles
- Expand cases endpoints (demographics, seasonality, diagnoses)
and insights; harden auth and file-based loaders
Data & tooling:
- Add processed outpatient/inpatient/combined case parquet (LFS)
- Add nested CLAUDE.md guides, pyrightconfig, and test updates
2026-06-21 17:35:03 +08:00
|
|
|
|
for rec in merged.to_dict('records'):
|
|
|
|
|
|
rv = float(rec['risk_value'])
|
|
|
|
|
|
lvl = _risk_level_of(rv)
|
|
|
|
|
|
if risk_level and lvl != risk_level:
|
feat: Initial CBPOA commit — 武汉儿童呼吸疾病风险评估系统
Context: Build a spatial risk assessment system correlating air quality
data with children's respiratory disease incidence across Wuhan.
Approach: FastAPI backend serving PostGIS spatial queries, React
frontend with Deck.gl maps, and a PyTorch SpatialTemporalGCN pipeline
for multi-day (1d/3d/7d) risk prediction.
Changes:
- backend/ — FastAPI API with auth (JWT), alerts, risk analysis,
geocoded case data, grid statistics, and report endpoints
- frontend/ — React dashboard with interactive risk maps, alert
monitoring, district comparison charts, and timeline player
- models/ — SpatialTemporalGCN model with trained weights and ONNX
export for inference
- scripts/ — ETL pipeline for weather + medical data, grid generation,
feature engineering, training, and daily inference
- deploy/ — Docker Compose configs for backend, frontend, and MLflow
- docs/ — API docs, deployment guide, user guide, and code review
Impact: Enables spatial risk visualization, alert monitoring, and
ML-driven health risk forecasting for environmental health teams.
2026-06-05 02:13:49 +08:00
|
|
|
|
continue
|
feat: add analysis pages and raster risk map
Ship a new app version with broader analytics, restructured
dashboards, and a server-rendered risk map.
Frontend:
- Add Overview, Demographic, Disease, and Environmental Health
analysis pages
- Add AnomalyMarkers, CalendarHeatmap, and MetricHeatmapTable
components
- Rebuild Alerts map onto server-rendered raster risk tiles;
expand Monitoring, Trend, and District Comparison views
- Extend API client, stores, and TypeScript types
Backend:
- Add environment router (pollutants, lag correlations)
- Add risk_raster util serving XYZ 100m risk tiles
- Expand cases endpoints (demographics, seasonality, diagnoses)
and insights; harden auth and file-based loaders
Data & tooling:
- Add processed outpatient/inpatient/combined case parquet (LFS)
- Add nested CLAUDE.md guides, pyrightconfig, and test updates
2026-06-21 17:35:03 +08:00
|
|
|
|
name = rec.get('district_name')
|
|
|
|
|
|
if not isinstance(name, str):
|
|
|
|
|
|
name = "未知"
|
|
|
|
|
|
lon = round(float(rec['center_lon']), 6)
|
|
|
|
|
|
lat = round(float(rec['center_lat']), 6)
|
|
|
|
|
|
features.append({
|
feat: Initial CBPOA commit — 武汉儿童呼吸疾病风险评估系统
Context: Build a spatial risk assessment system correlating air quality
data with children's respiratory disease incidence across Wuhan.
Approach: FastAPI backend serving PostGIS spatial queries, React
frontend with Deck.gl maps, and a PyTorch SpatialTemporalGCN pipeline
for multi-day (1d/3d/7d) risk prediction.
Changes:
- backend/ — FastAPI API with auth (JWT), alerts, risk analysis,
geocoded case data, grid statistics, and report endpoints
- frontend/ — React dashboard with interactive risk maps, alert
monitoring, district comparison charts, and timeline player
- models/ — SpatialTemporalGCN model with trained weights and ONNX
export for inference
- scripts/ — ETL pipeline for weather + medical data, grid generation,
feature engineering, training, and daily inference
- deploy/ — Docker Compose configs for backend, frontend, and MLflow
- docs/ — API docs, deployment guide, user guide, and code review
Impact: Enables spatial risk visualization, alert monitoring, and
ML-driven health risk forecasting for environmental health teams.
2026-06-05 02:13:49 +08:00
|
|
|
|
"type": "Feature",
|
feat: add analysis pages and raster risk map
Ship a new app version with broader analytics, restructured
dashboards, and a server-rendered risk map.
Frontend:
- Add Overview, Demographic, Disease, and Environmental Health
analysis pages
- Add AnomalyMarkers, CalendarHeatmap, and MetricHeatmapTable
components
- Rebuild Alerts map onto server-rendered raster risk tiles;
expand Monitoring, Trend, and District Comparison views
- Extend API client, stores, and TypeScript types
Backend:
- Add environment router (pollutants, lag correlations)
- Add risk_raster util serving XYZ 100m risk tiles
- Expand cases endpoints (demographics, seasonality, diagnoses)
and insights; harden auth and file-based loaders
Data & tooling:
- Add processed outpatient/inpatient/combined case parquet (LFS)
- Add nested CLAUDE.md guides, pyrightconfig, and test updates
2026-06-21 17:35:03 +08:00
|
|
|
|
"geometry": {"type": "Point", "coordinates": [lon, lat]},
|
feat: Initial CBPOA commit — 武汉儿童呼吸疾病风险评估系统
Context: Build a spatial risk assessment system correlating air quality
data with children's respiratory disease incidence across Wuhan.
Approach: FastAPI backend serving PostGIS spatial queries, React
frontend with Deck.gl maps, and a PyTorch SpatialTemporalGCN pipeline
for multi-day (1d/3d/7d) risk prediction.
Changes:
- backend/ — FastAPI API with auth (JWT), alerts, risk analysis,
geocoded case data, grid statistics, and report endpoints
- frontend/ — React dashboard with interactive risk maps, alert
monitoring, district comparison charts, and timeline player
- models/ — SpatialTemporalGCN model with trained weights and ONNX
export for inference
- scripts/ — ETL pipeline for weather + medical data, grid generation,
feature engineering, training, and daily inference
- deploy/ — Docker Compose configs for backend, frontend, and MLflow
- docs/ — API docs, deployment guide, user guide, and code review
Impact: Enables spatial risk visualization, alert monitoring, and
ML-driven health risk forecasting for environmental health teams.
2026-06-05 02:13:49 +08:00
|
|
|
|
"properties": {
|
feat: add analysis pages and raster risk map
Ship a new app version with broader analytics, restructured
dashboards, and a server-rendered risk map.
Frontend:
- Add Overview, Demographic, Disease, and Environmental Health
analysis pages
- Add AnomalyMarkers, CalendarHeatmap, and MetricHeatmapTable
components
- Rebuild Alerts map onto server-rendered raster risk tiles;
expand Monitoring, Trend, and District Comparison views
- Extend API client, stores, and TypeScript types
Backend:
- Add environment router (pollutants, lag correlations)
- Add risk_raster util serving XYZ 100m risk tiles
- Expand cases endpoints (demographics, seasonality, diagnoses)
and insights; harden auth and file-based loaders
Data & tooling:
- Add processed outpatient/inpatient/combined case parquet (LFS)
- Add nested CLAUDE.md guides, pyrightconfig, and test updates
2026-06-21 17:35:03 +08:00
|
|
|
|
"grid_id": str(rec.get('grid_id', '')),
|
feat: Initial CBPOA commit — 武汉儿童呼吸疾病风险评估系统
Context: Build a spatial risk assessment system correlating air quality
data with children's respiratory disease incidence across Wuhan.
Approach: FastAPI backend serving PostGIS spatial queries, React
frontend with Deck.gl maps, and a PyTorch SpatialTemporalGCN pipeline
for multi-day (1d/3d/7d) risk prediction.
Changes:
- backend/ — FastAPI API with auth (JWT), alerts, risk analysis,
geocoded case data, grid statistics, and report endpoints
- frontend/ — React dashboard with interactive risk maps, alert
monitoring, district comparison charts, and timeline player
- models/ — SpatialTemporalGCN model with trained weights and ONNX
export for inference
- scripts/ — ETL pipeline for weather + medical data, grid generation,
feature engineering, training, and daily inference
- deploy/ — Docker Compose configs for backend, frontend, and MLflow
- docs/ — API docs, deployment guide, user guide, and code review
Impact: Enables spatial risk visualization, alert monitoring, and
ML-driven health risk forecasting for environmental health teams.
2026-06-05 02:13:49 +08:00
|
|
|
|
"latitude": lat,
|
|
|
|
|
|
"longitude": lon,
|
feat: add analysis pages and raster risk map
Ship a new app version with broader analytics, restructured
dashboards, and a server-rendered risk map.
Frontend:
- Add Overview, Demographic, Disease, and Environmental Health
analysis pages
- Add AnomalyMarkers, CalendarHeatmap, and MetricHeatmapTable
components
- Rebuild Alerts map onto server-rendered raster risk tiles;
expand Monitoring, Trend, and District Comparison views
- Extend API client, stores, and TypeScript types
Backend:
- Add environment router (pollutants, lag correlations)
- Add risk_raster util serving XYZ 100m risk tiles
- Expand cases endpoints (demographics, seasonality, diagnoses)
and insights; harden auth and file-based loaders
Data & tooling:
- Add processed outpatient/inpatient/combined case parquet (LFS)
- Add nested CLAUDE.md guides, pyrightconfig, and test updates
2026-06-21 17:35:03 +08:00
|
|
|
|
"district": name,
|
|
|
|
|
|
"total_cases": int(rec.get('total_cases', 0)),
|
|
|
|
|
|
"population_density": round(float(rec.get('population_density', 0.0)), 2),
|
|
|
|
|
|
"risk_value": rv,
|
|
|
|
|
|
"risk_level": lvl,
|
feat: Initial CBPOA commit — 武汉儿童呼吸疾病风险评估系统
Context: Build a spatial risk assessment system correlating air quality
data with children's respiratory disease incidence across Wuhan.
Approach: FastAPI backend serving PostGIS spatial queries, React
frontend with Deck.gl maps, and a PyTorch SpatialTemporalGCN pipeline
for multi-day (1d/3d/7d) risk prediction.
Changes:
- backend/ — FastAPI API with auth (JWT), alerts, risk analysis,
geocoded case data, grid statistics, and report endpoints
- frontend/ — React dashboard with interactive risk maps, alert
monitoring, district comparison charts, and timeline player
- models/ — SpatialTemporalGCN model with trained weights and ONNX
export for inference
- scripts/ — ETL pipeline for weather + medical data, grid generation,
feature engineering, training, and daily inference
- deploy/ — Docker Compose configs for backend, frontend, and MLflow
- docs/ — API docs, deployment guide, user guide, and code review
Impact: Enables spatial risk visualization, alert monitoring, and
ML-driven health risk forecasting for environmental health teams.
2026-06-05 02:13:49 +08:00
|
|
|
|
}
|
feat: add analysis pages and raster risk map
Ship a new app version with broader analytics, restructured
dashboards, and a server-rendered risk map.
Frontend:
- Add Overview, Demographic, Disease, and Environmental Health
analysis pages
- Add AnomalyMarkers, CalendarHeatmap, and MetricHeatmapTable
components
- Rebuild Alerts map onto server-rendered raster risk tiles;
expand Monitoring, Trend, and District Comparison views
- Extend API client, stores, and TypeScript types
Backend:
- Add environment router (pollutants, lag correlations)
- Add risk_raster util serving XYZ 100m risk tiles
- Expand cases endpoints (demographics, seasonality, diagnoses)
and insights; harden auth and file-based loaders
Data & tooling:
- Add processed outpatient/inpatient/combined case parquet (LFS)
- Add nested CLAUDE.md guides, pyrightconfig, and test updates
2026-06-21 17:35:03 +08:00
|
|
|
|
})
|
feat: Initial CBPOA commit — 武汉儿童呼吸疾病风险评估系统
Context: Build a spatial risk assessment system correlating air quality
data with children's respiratory disease incidence across Wuhan.
Approach: FastAPI backend serving PostGIS spatial queries, React
frontend with Deck.gl maps, and a PyTorch SpatialTemporalGCN pipeline
for multi-day (1d/3d/7d) risk prediction.
Changes:
- backend/ — FastAPI API with auth (JWT), alerts, risk analysis,
geocoded case data, grid statistics, and report endpoints
- frontend/ — React dashboard with interactive risk maps, alert
monitoring, district comparison charts, and timeline player
- models/ — SpatialTemporalGCN model with trained weights and ONNX
export for inference
- scripts/ — ETL pipeline for weather + medical data, grid generation,
feature engineering, training, and daily inference
- deploy/ — Docker Compose configs for backend, frontend, and MLflow
- docs/ — API docs, deployment guide, user guide, and code review
Impact: Enables spatial risk visualization, alert monitoring, and
ML-driven health risk forecasting for environmental health teams.
2026-06-05 02:13:49 +08:00
|
|
|
|
|
|
|
|
|
|
return GridGeoJSONResponse(
|
|
|
|
|
|
type="FeatureCollection",
|
|
|
|
|
|
features=features,
|
|
|
|
|
|
timestamp=datetime.now().isoformat(),
|
feat: add analysis pages and raster risk map
Ship a new app version with broader analytics, restructured
dashboards, and a server-rendered risk map.
Frontend:
- Add Overview, Demographic, Disease, and Environmental Health
analysis pages
- Add AnomalyMarkers, CalendarHeatmap, and MetricHeatmapTable
components
- Rebuild Alerts map onto server-rendered raster risk tiles;
expand Monitoring, Trend, and District Comparison views
- Extend API client, stores, and TypeScript types
Backend:
- Add environment router (pollutants, lag correlations)
- Add risk_raster util serving XYZ 100m risk tiles
- Expand cases endpoints (demographics, seasonality, diagnoses)
and insights; harden auth and file-based loaders
Data & tooling:
- Add processed outpatient/inpatient/combined case parquet (LFS)
- Add nested CLAUDE.md guides, pyrightconfig, and test updates
2026-06-21 17:35:03 +08:00
|
|
|
|
).model_dump_json()
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
@router.get("/grids/geojson", response_model=GridGeoJSONResponse)
|
|
|
|
|
|
async def get_grids_geojson(
|
|
|
|
|
|
date: str = Query(..., description="Date (YYYY-MM-DD)"),
|
|
|
|
|
|
district: Optional[str] = Query(None, description="Filter by district"),
|
|
|
|
|
|
risk_level: Optional[str] = Query(None, description="Filter by risk level"),
|
|
|
|
|
|
):
|
|
|
|
|
|
"""Get grid data as GeoJSON for map visualization (cached per query)."""
|
|
|
|
|
|
try:
|
|
|
|
|
|
# Offload the parquet merges + vectorised compute to a thread so the
|
|
|
|
|
|
# cold-cache build doesn't block the event loop.
|
|
|
|
|
|
body = await asyncio.to_thread(_grids_geojson_body, date, district, risk_level)
|
|
|
|
|
|
except FileNotFoundError:
|
|
|
|
|
|
return GridGeoJSONResponse(type="FeatureCollection", features=[], timestamp=datetime.now().isoformat())
|
|
|
|
|
|
return Response(content=body, media_type="application/json")
|
feat: Initial CBPOA commit — 武汉儿童呼吸疾病风险评估系统
Context: Build a spatial risk assessment system correlating air quality
data with children's respiratory disease incidence across Wuhan.
Approach: FastAPI backend serving PostGIS spatial queries, React
frontend with Deck.gl maps, and a PyTorch SpatialTemporalGCN pipeline
for multi-day (1d/3d/7d) risk prediction.
Changes:
- backend/ — FastAPI API with auth (JWT), alerts, risk analysis,
geocoded case data, grid statistics, and report endpoints
- frontend/ — React dashboard with interactive risk maps, alert
monitoring, district comparison charts, and timeline player
- models/ — SpatialTemporalGCN model with trained weights and ONNX
export for inference
- scripts/ — ETL pipeline for weather + medical data, grid generation,
feature engineering, training, and daily inference
- deploy/ — Docker Compose configs for backend, frontend, and MLflow
- docs/ — API docs, deployment guide, user guide, and code review
Impact: Enables spatial risk visualization, alert monitoring, and
ML-driven health risk forecasting for environmental health teams.
2026-06-05 02:13:49 +08:00
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
@router.post("/predict/multi-day", response_model=MultiDayPredictionResponse)
|
|
|
|
|
|
async def predict_multi_day(request: MultiDayPredictionRequest):
|
|
|
|
|
|
"""
|
|
|
|
|
|
Multi-day prediction API for grid-level risk assessment.
|
|
|
|
|
|
|
|
|
|
|
|
Returns risk predictions for each grid cell across multiple days.
|
|
|
|
|
|
Uses the SpatialTemporalGCN model with on-demand feature generation.
|
|
|
|
|
|
"""
|
|
|
|
|
|
from scripts.generate_grid_features import GridFeatureGenerator
|
|
|
|
|
|
|
|
|
|
|
|
try:
|
|
|
|
|
|
start_date = datetime.strptime(request.date, "%Y-%m-%d")
|
|
|
|
|
|
except ValueError:
|
|
|
|
|
|
raise HTTPException(status_code=400, detail="Invalid date format. Use YYYY-MM-DD")
|
|
|
|
|
|
|
|
|
|
|
|
generator = GridFeatureGenerator()
|
|
|
|
|
|
|
|
|
|
|
|
predictions = []
|
|
|
|
|
|
warnings = []
|
|
|
|
|
|
date_range = (request.date, (start_date + timedelta(days=request.days - 1)).strftime("%Y-%m-%d"))
|
|
|
|
|
|
|
|
|
|
|
|
for day_offset in range(request.days):
|
|
|
|
|
|
current_date = (start_date + timedelta(days=day_offset)).strftime("%Y-%m-%d")
|
|
|
|
|
|
|
|
|
|
|
|
try:
|
|
|
|
|
|
features_df = generator.generate_features(current_date)
|
|
|
|
|
|
|
|
|
|
|
|
if request.district:
|
|
|
|
|
|
features_df = features_df[
|
|
|
|
|
|
features_df['district'] == request.district
|
|
|
|
|
|
]
|
|
|
|
|
|
|
|
|
|
|
|
for _, row in features_df.iterrows():
|
feat: add analysis pages and raster risk map
Ship a new app version with broader analytics, restructured
dashboards, and a server-rendered risk map.
Frontend:
- Add Overview, Demographic, Disease, and Environmental Health
analysis pages
- Add AnomalyMarkers, CalendarHeatmap, and MetricHeatmapTable
components
- Rebuild Alerts map onto server-rendered raster risk tiles;
expand Monitoring, Trend, and District Comparison views
- Extend API client, stores, and TypeScript types
Backend:
- Add environment router (pollutants, lag correlations)
- Add risk_raster util serving XYZ 100m risk tiles
- Expand cases endpoints (demographics, seasonality, diagnoses)
and insights; harden auth and file-based loaders
Data & tooling:
- Add processed outpatient/inpatient/combined case parquet (LFS)
- Add nested CLAUDE.md guides, pyrightconfig, and test updates
2026-06-21 17:35:03 +08:00
|
|
|
|
risk_1d = float(row.get('risk_1day', 0.5)) # type: ignore[arg-type]
|
|
|
|
|
|
risk_3d = float(row.get('risk_3day', 0.5)) # type: ignore[arg-type]
|
|
|
|
|
|
risk_7d = float(row.get('risk_7day', 0.5)) # type: ignore[arg-type]
|
feat: Initial CBPOA commit — 武汉儿童呼吸疾病风险评估系统
Context: Build a spatial risk assessment system correlating air quality
data with children's respiratory disease incidence across Wuhan.
Approach: FastAPI backend serving PostGIS spatial queries, React
frontend with Deck.gl maps, and a PyTorch SpatialTemporalGCN pipeline
for multi-day (1d/3d/7d) risk prediction.
Changes:
- backend/ — FastAPI API with auth (JWT), alerts, risk analysis,
geocoded case data, grid statistics, and report endpoints
- frontend/ — React dashboard with interactive risk maps, alert
monitoring, district comparison charts, and timeline player
- models/ — SpatialTemporalGCN model with trained weights and ONNX
export for inference
- scripts/ — ETL pipeline for weather + medical data, grid generation,
feature engineering, training, and daily inference
- deploy/ — Docker Compose configs for backend, frontend, and MLflow
- docs/ — API docs, deployment guide, user guide, and code review
Impact: Enables spatial risk visualization, alert monitoring, and
ML-driven health risk forecasting for environmental health teams.
2026-06-05 02:13:49 +08:00
|
|
|
|
|
|
|
|
|
|
if risk_1d >= 0.8:
|
|
|
|
|
|
risk_level = "high"
|
|
|
|
|
|
elif risk_1d >= 0.6:
|
|
|
|
|
|
risk_level = "medium_high"
|
|
|
|
|
|
elif risk_1d >= 0.4:
|
|
|
|
|
|
risk_level = "medium"
|
|
|
|
|
|
elif risk_1d >= 0.2:
|
|
|
|
|
|
risk_level = "medium_low"
|
|
|
|
|
|
else:
|
|
|
|
|
|
risk_level = "low"
|
|
|
|
|
|
|
|
|
|
|
|
predictions.append(GridPrediction(
|
|
|
|
|
|
grid_id=row['grid_id'],
|
|
|
|
|
|
latitude=row.get('center_lat', 0),
|
|
|
|
|
|
longitude=row.get('center_lon', 0),
|
|
|
|
|
|
risk_1day=risk_1d,
|
|
|
|
|
|
risk_3day=risk_3d,
|
|
|
|
|
|
risk_7day=risk_7d,
|
|
|
|
|
|
risk_level=risk_level,
|
|
|
|
|
|
confidence=0.85,
|
|
|
|
|
|
))
|
|
|
|
|
|
|
|
|
|
|
|
except Exception as e:
|
|
|
|
|
|
logging.getLogger("cbpoa.grid").warning("Failed to generate features for %s: %s", current_date, e)
|
|
|
|
|
|
warnings.append(f"Failed to generate features for {current_date}: {e}")
|
|
|
|
|
|
continue
|
|
|
|
|
|
|
|
|
|
|
|
if len(predictions) >= 50000:
|
|
|
|
|
|
break
|
|
|
|
|
|
|
|
|
|
|
|
return MultiDayPredictionResponse(
|
|
|
|
|
|
predictions=predictions[:50000],
|
|
|
|
|
|
total_grids=len(predictions),
|
|
|
|
|
|
date_range=date_range,
|
|
|
|
|
|
model_version="1.3.7",
|
|
|
|
|
|
timestamp=datetime.now().isoformat(),
|
|
|
|
|
|
partial=len(warnings) > 0,
|
|
|
|
|
|
warnings=warnings,
|
|
|
|
|
|
)
|
|
|
|
|
|
|
|
|
|
|
|
|
feat: add analysis pages and raster risk map
Ship a new app version with broader analytics, restructured
dashboards, and a server-rendered risk map.
Frontend:
- Add Overview, Demographic, Disease, and Environmental Health
analysis pages
- Add AnomalyMarkers, CalendarHeatmap, and MetricHeatmapTable
components
- Rebuild Alerts map onto server-rendered raster risk tiles;
expand Monitoring, Trend, and District Comparison views
- Extend API client, stores, and TypeScript types
Backend:
- Add environment router (pollutants, lag correlations)
- Add risk_raster util serving XYZ 100m risk tiles
- Expand cases endpoints (demographics, seasonality, diagnoses)
and insights; harden auth and file-based loaders
Data & tooling:
- Add processed outpatient/inpatient/combined case parquet (LFS)
- Add nested CLAUDE.md guides, pyrightconfig, and test updates
2026-06-21 17:35:03 +08:00
|
|
|
|
def _compute_grid_history(grid_id: str, days: int) -> dict:
|
|
|
|
|
|
"""Heavy synchronous parquet reads + per-row loop (called in thread pool)."""
|
feat: Initial CBPOA commit — 武汉儿童呼吸疾病风险评估系统
Context: Build a spatial risk assessment system correlating air quality
data with children's respiratory disease incidence across Wuhan.
Approach: FastAPI backend serving PostGIS spatial queries, React
frontend with Deck.gl maps, and a PyTorch SpatialTemporalGCN pipeline
for multi-day (1d/3d/7d) risk prediction.
Changes:
- backend/ — FastAPI API with auth (JWT), alerts, risk analysis,
geocoded case data, grid statistics, and report endpoints
- frontend/ — React dashboard with interactive risk maps, alert
monitoring, district comparison charts, and timeline player
- models/ — SpatialTemporalGCN model with trained weights and ONNX
export for inference
- scripts/ — ETL pipeline for weather + medical data, grid generation,
feature engineering, training, and daily inference
- deploy/ — Docker Compose configs for backend, frontend, and MLflow
- docs/ — API docs, deployment guide, user guide, and code review
Impact: Enables spatial risk visualization, alert monitoring, and
ML-driven health risk forecasting for environmental health teams.
2026-06-05 02:13:49 +08:00
|
|
|
|
import pandas as pd
|
|
|
|
|
|
|
2026-06-05 02:27:10 +08:00
|
|
|
|
district_map = _load_parquet(PROJECT_ROOT / "processed" / "grid_district_mapping.parquet")
|
feat: Initial CBPOA commit — 武汉儿童呼吸疾病风险评估系统
Context: Build a spatial risk assessment system correlating air quality
data with children's respiratory disease incidence across Wuhan.
Approach: FastAPI backend serving PostGIS spatial queries, React
frontend with Deck.gl maps, and a PyTorch SpatialTemporalGCN pipeline
for multi-day (1d/3d/7d) risk prediction.
Changes:
- backend/ — FastAPI API with auth (JWT), alerts, risk analysis,
geocoded case data, grid statistics, and report endpoints
- frontend/ — React dashboard with interactive risk maps, alert
monitoring, district comparison charts, and timeline player
- models/ — SpatialTemporalGCN model with trained weights and ONNX
export for inference
- scripts/ — ETL pipeline for weather + medical data, grid generation,
feature engineering, training, and daily inference
- deploy/ — Docker Compose configs for backend, frontend, and MLflow
- docs/ — API docs, deployment guide, user guide, and code review
Impact: Enables spatial risk visualization, alert monitoring, and
ML-driven health risk forecasting for environmental health teams.
2026-06-05 02:13:49 +08:00
|
|
|
|
grid_info = district_map[district_map['grid_id'] == grid_id]
|
|
|
|
|
|
|
|
|
|
|
|
if len(grid_info) == 0:
|
|
|
|
|
|
raise HTTPException(status_code=404, detail="Grid not found")
|
|
|
|
|
|
|
|
|
|
|
|
district = grid_info.iloc[0]['district_name']
|
|
|
|
|
|
|
2026-06-21 20:24:26 +08:00
|
|
|
|
cases_df = load_cases_by_district_daily()
|
feat: Initial CBPOA commit — 武汉儿童呼吸疾病风险评估系统
Context: Build a spatial risk assessment system correlating air quality
data with children's respiratory disease incidence across Wuhan.
Approach: FastAPI backend serving PostGIS spatial queries, React
frontend with Deck.gl maps, and a PyTorch SpatialTemporalGCN pipeline
for multi-day (1d/3d/7d) risk prediction.
Changes:
- backend/ — FastAPI API with auth (JWT), alerts, risk analysis,
geocoded case data, grid statistics, and report endpoints
- frontend/ — React dashboard with interactive risk maps, alert
monitoring, district comparison charts, and timeline player
- models/ — SpatialTemporalGCN model with trained weights and ONNX
export for inference
- scripts/ — ETL pipeline for weather + medical data, grid generation,
feature engineering, training, and daily inference
- deploy/ — Docker Compose configs for backend, frontend, and MLflow
- docs/ — API docs, deployment guide, user guide, and code review
Impact: Enables spatial risk visualization, alert monitoring, and
ML-driven health risk forecasting for environmental health teams.
2026-06-05 02:13:49 +08:00
|
|
|
|
cases_df['date'] = pd.to_datetime(cases_df['date'])
|
|
|
|
|
|
|
|
|
|
|
|
end_date = datetime.now()
|
|
|
|
|
|
start_date = end_date - timedelta(days=days)
|
|
|
|
|
|
|
|
|
|
|
|
filtered = cases_df[
|
|
|
|
|
|
(cases_df['date'] >= start_date) &
|
|
|
|
|
|
(cases_df['date'] <= end_date) &
|
|
|
|
|
|
(cases_df['district'] == district)
|
|
|
|
|
|
]
|
|
|
|
|
|
|
|
|
|
|
|
history = []
|
|
|
|
|
|
for _, row in filtered.iterrows():
|
|
|
|
|
|
history.append({
|
|
|
|
|
|
"date": row['date'].strftime("%Y-%m-%d"),
|
|
|
|
|
|
"cases": int(row['total_cases']),
|
|
|
|
|
|
"outpatient": int(row['outpatient_count']),
|
|
|
|
|
|
"inpatient": int(row['inpatient_count']),
|
|
|
|
|
|
})
|
|
|
|
|
|
|
|
|
|
|
|
return {
|
|
|
|
|
|
"grid_id": grid_id,
|
|
|
|
|
|
"district": district,
|
|
|
|
|
|
"history": history,
|
|
|
|
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"timestamp": datetime.now().isoformat(),
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feat: add analysis pages and raster risk map
Ship a new app version with broader analytics, restructured
dashboards, and a server-rendered risk map.
Frontend:
- Add Overview, Demographic, Disease, and Environmental Health
analysis pages
- Add AnomalyMarkers, CalendarHeatmap, and MetricHeatmapTable
components
- Rebuild Alerts map onto server-rendered raster risk tiles;
expand Monitoring, Trend, and District Comparison views
- Extend API client, stores, and TypeScript types
Backend:
- Add environment router (pollutants, lag correlations)
- Add risk_raster util serving XYZ 100m risk tiles
- Expand cases endpoints (demographics, seasonality, diagnoses)
and insights; harden auth and file-based loaders
Data & tooling:
- Add processed outpatient/inpatient/combined case parquet (LFS)
- Add nested CLAUDE.md guides, pyrightconfig, and test updates
2026-06-21 17:35:03 +08:00
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}
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@router.get("/grids/{grid_id}/history")
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async def get_grid_history(
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grid_id: str,
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days: int = Query(30, ge=1, le=365, description="Number of days of history"),
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):
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"""
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Get historical data for a specific grid cell.
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Parquet reads + aggregation run in a thread pool to avoid blocking the
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async event loop.
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"""
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return await asyncio.to_thread(_compute_grid_history, grid_id, days)
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